Genome Feature Data
Data Type: genome_feature
Primary Key: feature_id
Attributes
-
aa_length
(
integer)
-
aa_sequence_md5
(
string)
-
accession
(
string)
-
alt_locus_tag
(
string)
-
annotation
(
case insensitive string)
-
brc_id
(
string)
-
classifier_round
(
integer)
-
classifier_score
(
number)
-
codon_start
(
integer)
-
date_inserted
(
date)
-
date_modified
(
date)
-
end
(
integer)
-
feature_id
*
(
string)
-
feature_type
(
case insensitive string)
-
figfam_id
(
string)
-
gene
(
case insensitive string)
-
gene_id
(
number)
-
genome_id
(
string)
-
genome_name
(
case insensitive string)
-
go
(
array of case insensitive strings)
-
location
(
string)
-
na_length
(
integer)
-
na_sequence_md5
(
string)
-
notes
(
array of strings)
-
og_id
(
string)
-
owner
(
string)
-
p2_feature_id
(
number)
-
patric_id
(
string)
-
pdb_accession
(
array of strings)
-
pgfam_id
(
string)
-
plfam_id
(
string)
-
product
(
case insensitive string)
-
property
(
array of strings)
-
protein_id
(
string)
-
public
(
boolean)
-
refseq_locus_tag
(
string)
-
segments
(
array of strings)
-
sequence_id
(
string)
-
sog_id
(
string)
-
start
(
integer)
-
strand
(
string)
-
taxon_id
(
integer)
-
uniprotkb_accession
(
string)
-
user_read
(
array of strings)
-
user_write
(
array of strings)
API
GET :feature_id
Retrieve a genome_feature data object by feature_id
EXAMPLE
https://www.bv-brc.org/api/genome_feature/RefSeq.1001732.3.AKUQ01000008.CDS.655540.656001.rev
Try It!
QUERY :query
Query for genome_feature data objects with an RQL Query
Return Formats
Requests may include an HTTP ACCEPT header from this list to transform the data into the requested type.
-
application/json - Returns results as an array of JSON objects
-
application/solr+json - Results results in SOLR JSON response format
-
text/csv - Returns results in Comma Separated values (CSV) format. Columns are separated by ','. Multi-value columns are separated by ';'. Rows are separated by new line
-
text/tsv - Returns results in Tab Separated values (TSV) format. Columns are separated by a tab. Multi-value columns are separated by ';'. Rows are separated by new line
-
application/vnd.openxmlformats - Returns objects as an MS Excel document
-
application/dna+fasta - Returns DNA sequences for queries in FASTA format
-
application/protein+fasta - Returns Protein sequences for queries in FASTA format
-
application/dna+jsonh+fasta - Returns DNA sequences for queries in JSONH-FASTA format
-
application/protein+jsonh+fasta - Returns Protein sequences for queries in JSONH-FASTA format
-
application/gff - Returns a genomic features in GFF format
EXAMPLES
- Query for genome_feature data objects with a feature_id equal to RefSeq.1001732.3.AKUQ01000008.CDS.655540.656001.rev. Return results as a JSON Array.
https://www.bv-brc.org/api/genome_feature/?eq(feature_id,RefSeq.1001732.3.AKUQ01000008.CDS.655540.656001.rev)
Try It!
- Query for genome features for genome 90370.851, limit to 5 sequences. Return JSON data.
https://www.bv-brc.org/api/genome_feature/?eq(genome_id,90370.851)&limit(5)
Try It!
- Query for genome features for genome 90370.851 with PATRIC Annotation, limit to 5 sequences. Return DNA Fasta.
https://www.bv-brc.org/api/genome_feature/?and(eq(annotation,PATRIC),eq(genome_id,90370.851))&limit(5)&http_accept=application/dna+fasta
Try It!