p3-all-drugs

Return All Drugs in BV-BRC

p3-all-drugs [options]

This script returns the IDs of all the antibiotic drugs in the BV-BRC database. It supports standard filtering parameters and the specification of additional columns if desired.

Parameters

There are no positional parameters.

The command-line options are those given in Data Options plus the following.

• fields

List the names of the available fields.

Example

This command is used in the tutorial p3_CLI.html;

p3-all-drugs | p3-get-drug-genomes --attr genome_id --attr genome_name --resistant

It lists all drugs in the database and feeds the id’s to the p3-get-drug-genomes script to get resistance data relating to specific drugs from a list.