p3-project-subsystems¶
Project Subsystems onto BV-BRC Genomes¶
p3-project-subystems.pl [ options ] outDir genome1 genome2 ... genomeN
This script will examine BV-BRC genomes and project subsystems onto them. The resulting GTOs will be output to the specified output directory.
Parameters¶
The positional parameters are the name of the output directory followed by one or more BV-BRC genome IDs.
The command-line options are the following:
roleFile
Name of a tab-delimited file containing [role checksum, subsystem name] pairs.
variantFile
Name of a tab-delimited file containing in each record (0) a subsystem name, (1) a variant code, and (2) a space-delimited list of role checksums.