p3-get-genome-protein-structures

Return Protein Structures for Genomes

p3-get-feature-protein-structures.pl [options]

This script takes as input a list of BV-BRC genome IDs and outputs the protein structures associated with each. The genome IDs will be read from the standard input (usually in the last column), and the data for each protein structure in any of the genome’s features will be appended to the input to form the output. Since each genome has thousands of features, and each feature can have many identified structures, each input record will produce a significant number of output lines.

Parameters

The standard input can be overridden using the options in Input Options.

Additional command-line options are those given in Data Options and Column Options plus the following.

• fields

List the available field names.