p3-get-drug-genomes¶
Return AMR Data for Drugs From BV-BRC¶
p3-get-drug-genomes [options]
This script returns general anti-microbial resistance data given an input column of drug names. It supports standard filtering parameters and the specification of additional output columns if desired.
Parameters¶
There are no positional parameters.
The standard input should contain drug names in the key column. You may specify the standard input using the options in Input Options.
Additional command-line options are those given in Data Options and Column Options plud the following
fields
Show available fields.
resistant
Filter for genomes resistant to the incoming drug.
susceptible
Filter for genoems susceptible to the incoming drug.