p3-gto-fetch

Copy GTOs from SubDirectories

p3-gto-fetch.pl [options] sourceDir targetDir

This is a rather esoteric script that locates GenomeTypeObject file in a set of subdirectories by genome ID. The genome IDs are read from the input file, and then the subdirectories are searched to find GTOs with those IDs in the names. The GTOs are then copied to the target directory.

Parameters

The positional parameters are the names of the source and target directories.

The standard input can be overridden using the options in Input Options. The column containing the genome ID can be specified using the options in Column Options.

Additional command-line options are the following.

• clear

Erase the target directory if it already exists.

• subCol

If specified, the index (1-based) or name of a column containing subdirectory names. The GTOs will be copied into a subdirectory of the target with the same name as the value in the column.